`rbatools.metabolite_block` module

Classes

class MetaboliteBlock (ancestors: InformationBlock)

Class holding information on the metabolites in the model.

Elements : dict: Each model-meatbolite is represented by a key. The values, holding information on each metabolite, are dicts with predefined keys: 'ID' : meatbolite ID in model (type str) 'OtherIDs' : identifiers of this metabolite in other namespaces (BiGG, KEGG …) (type dict) 'Name' : Name according to BiGG (type str) 'ReactionsInvolvedWith' : Reactions which produce or consume this metabolite (type list) 'boundary' : Boundary metabolite (type boolean) 'Type' : Type of metabolite (internal exernal or biomass-precursor) (type str) 'Compartment' : Location of meatbolite (type str) 'AssociatedTarget' : Wheter metabolite represents a target 'MassBalance_Constraint' : Id of associated mass-balance constraint.

def from_files(self, model, Info, MetaboliteAnnotations, sbml): Derive reaction-info from RBA-model.

Input

RBA-model Dataframe, holding BiGG-metabolite information.

Returns

Dictionary with metabolite-info.
def overview(self): Derive statistics on metabolites.

Returns

Dictionary with general numbers on metabolites.