`rbatools.reaction_block` module

Classes

class ReactionBlock (ancestors: InformationBlock)

Class holding information on the reactions in the model.

Elements : dict: Each model-enzyme is represented by a key. The values, holding information on each enzyme, are dicts with predefined keys: 'ID' : reaction ID in model (type str) 'Compartment_Machinery' : Localisation of enzyme-subunit, catalysing this reaction. (type list) 'Name' : name according to BiGG (type str) 'OtherIDs' : Other reaction names (eg. BiGG, KEGG) (type list) 'Formula' : Reaction formula as string (type str) 'Reactants' : Which metabolites does this reaction consume of and many (type dict) 'Products' : Which metabolites does this reaction produce of and many (type dict) 'Reversible' : Wheter reaction is reversible (type bool) 'Type' : Type of reaction ('normal' or 'transport') (type str) 'Compartment_Species' : Location of the metabolites involved with this reaction (type list) 'Enzyme' : Enzyme catalysing this reaction (type str) 'Twins' : Isoreactions of this reactions (catalysed by iso-enzymes) (type list) 'AssociatedTarget' : Wheter reaction has a flux target.

def from_files(self, model, Info, ReactionAnnotations, sbml, metaboliteBlock): Derive reaction-info from RBA-model.

Input

RBA-model Dataframe, holding BiGG-reaction information.

Returns

Dictionary with reaction-info.
def overview(self): Derive statistics on reactions.

Returns

Dictionary with general numbers on reactions.